| 7:30-8:30 AM |
On-site Registration, Breakfast, and Poster Setup |
| 8:30-8:50 AM |
Opening Remarks by John Wooley/ UCSD [video] |
| 8:50-9:20 AM |
Larry Smarr/ Calit2-UCSD
"Cyber metagenomics" [Abstract] [video] [ppt] |
| 9:20-10:25 AM |
Metagenomics I: Microbial Population and Environmental Genomics
- Francisco Rodriguez-Valera/ Universidad Miguel Hernández
(Spain)
"Strain genome, pangenome and metagenome: The case of
the square haloarchaeon" [Abstract] [video] [ppt]
- Jeffrey I. Gordon/ Washington University of St. Louis
"It's so nice to have a few trillion friends: Exploring the
structure and functions of our human gut microbiota and
microbiome" [Abstract] [video] |
| 10:25-10:40 AM |
Coffee Break |
| 10:40-12:00 PM |
Metagenomics II: Microbial Cyberinfrastructure
(This session is followed by demonstrations after Lunch)
- Paul Gilna/ Calit2-UCSD
"The CAMERA project: A cyberinfrastructure for microbial
metagenomic research" [Abstract] [video] [ppt]
- Frank Oliver Glöckner/ Max Planck Institute for Marine
Microbiology (Germany)
"Novel approaches to bioinformatics for metagenome analysis"
[Abstract] [video]
- Victor Markowitz/ Lawrence Berkeley National Lab
"IMG/M: Towards a production metagenome data management
and analysis system" [Abstract] [video] |
| 12:00-1:00 PM |
Lunch and Poster Setup |
| 1:00-2:30 PM |
Parallel Tutorials/Demonstrations
Multiple locations in Calit2 (Atkinson Hall)
- Tutorial: CAMERA
- Tutorial: IMG/M
- Tutorial: megx.net
- Demonstration: OptIPortal (tiled display demo)
- Demonstration: 4K Super High Definition |
| 2:30-2:45 PM |
Coffee Break |
| 2:45-4:20 PM |
Metagenomics III: Microbial Evolution, Functional
Metagenomics and Biogeochemistry
- W. Ford Doolittle/ Dalhousie University (Canada)
"Metagenomes and metaspecies" [Abstract] [video]
- Vincent Denef/ University of California, Berkeley
"Strain-resolved community proteomics reveals that
recombination shapes the genomes of acidophilic bacteria"
[Abstract] [video]
- Edward F. DeLong/ MIT
"Microbial ocean metagenomics: The central dogma meets
systems ecology" [Abstract]
[video] [pdf]
|
| 4:20-4:35 PM |
Coffee Break |
| 4:35-5:45 PM |
Metagenomics IV: Panel Discussion/ Challenge and Opportunities
- Co-Chair: Doug Bartlett/ SIO-UCSD
- Co-Chair: Rob Edwards/ San Diego State University
Panel: all speakers and more [video] |
| 6:00-7:30 PM |
Poster Session/Cocktail Hour |
| 7:30 PM |
Dinner |
| 8:30-9:00 PM |
Keynote Speech II: Jonathan Eisen/ University of California, Davis
"The 'axis of evol' and the uses of evolutionary analysis in metagenomic studies" [Abstract] [video]
|
| (Go back to Sea Lodge Hotel by Shuttle) |
