Computational Systems Bioinformatics 2007 Talks Archived for On-Demand Viewing over the Web
San Diego, CA, August 28, 2007 -- The first six conferences on Computational Systems Bioinformatics (CSB) were held at Stanford. Then the conference series joined forces with the not-for-profit Life Sciences Society, and CSB2007 moved to UC San Diego and Calit2, which is devoting increasing attention at the interface of computer science and the life sciences, led by scientists including John Wooley, who chaired CSB2007 and the recent Metagenomics 2007 conference (also held in Atkinson Hall).
More than three dozen CSB2007 presentations were webcast live over the Internet, and they have now been archived for on-demand viewing [Real player and broadband connection required]. To watch a talk, click on the image or video link below.
| TUESDAY | AUGUST 14, 2007 |
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Dirk Husmeier
Bayesian Integration of Biological Prior Knowledge into the Reconstruction of Gene Networks with Bayesian Network Length: 23:59 [video]
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Hon Nian Chua
Using Indirect Protein-Protein Interactions for Protein Complex Prediction Length: 23:40 [video] |
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M.H. Siu
Finding Linear Motif Pair from Protein Interaction Networks: A Probabilistic Approach Length: 22:11 [video]
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INVITED TALK
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Zheng Fu, Tao Jiang (Authors)
Clustering of Main Orthologs for Multiple Genomes Length: 23:59 [video]
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Erliang Zeng
IEM: An Algorithm for Iterative Enhancement of Motifs Using Comparative Genomics Data Length: 22:37 [video]
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KEYNOTE ADDRESS
Terry Hwa
Quantitative Aspects of Gene Regulation in Bacteria: Amplification, Threshold, and Combinatorial Control |
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INVITED TALK
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Sven Rahmann
Exact and Heuristic Algorithms for Weighted Cluster Editing Length: 27:10 [video]
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Nikil Wale
Methods for Effective Virtual Screening and Scaffold-Hopping in Chemical Compounds Length: 26:46 [video]
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| WEDNESDAY | AUGUST 15, 2007 |
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Xiaoyu Zhang
Extraction, Visualization and Quantification of Protein Pockets Length: 24:18 [video]
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Zeyar Aung
Uncovering the Structural Basis of Protein Interactions with Efficient Clustering of 3-D Interaction Interfaces
Length: 23:53 [video]
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Sergio Anibal de Carvalho Junior
Improving the Design of GeneChip Arrays by Combining Placement and Embedding Length: 21:33 [video]
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Ying Liu
Modeling Species-Genes Data for Efficient Phylogenetic Inference Length: 25:08 [video]
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INVITED TALK
Kimmen Sjölander
The Phylofacts Phylogenomic Encyclopedia: Structural Phylogenomic Analysis Across the Tree of Life Length: 34:36 [video]
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KEYNOTE ADDRESS
Mike Levine
Whole-Genome Analysis of Dorsal Gradient Thresholds in the Drosophila Embryo Length: 1:02:33 [video]
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Kyle Ellrott
Improvement in Protein Sequence-Structure Alignment Using Insertion/Deletion Frequency Arrays Length: 12:54 [video]
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Fan Meng
An Active Visual Search Interface for Medline Length: 24:54 [video]
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William Lau
Rule-Based Human Gene Normalization in Biomedical Text with Confidence Estimation Length: 23:27 [video]
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Chitta Baral, Graciela Gonzalez, Anthony Gitter, Craig Teegarden, Amanda Zeigler, G. Joshi-Topé (Authors)
CBioC: Beyond a Prototype for Collaborative Annotation of Molecular Interactions from the Literature Length: 17:50 [video]
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Arvind Rao
Using Directed Information to Build Biologically Relevant Influence Networks Length: 26:39 [video]
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INVITED SPEAKER
Shannon Williamson
Extreme Metagenomics: Investigations of Virus-Host Interactions in Deep-Sea Environments Length: 32:20 [video]
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AUGUST 16, 2007
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Kang Ning
Algorithm for Peptide Sequencing by Tandem Mass Spectrometry Based on Better Preprocess and Anti-symmetric Computational Model Length: 19:14 [video]
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Wei Zheng
Algorithms for Selecting Breakpoint Locations to Optimize Diversity in Protein Engineering by Site-directed Protein Recombination Length: 18:22 [video]
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INVITED TALK
Kavitha Venkatesan
Mapping and Analysis of the Human Interactome Network Length: 38:25 [video]
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Xiaoxu Han
Cancer Molecular Pattern Discovery by Subspace Consensus Kernel Classification Length: 29:52 [video]
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Lan Liu
Efficient Algorithms for Genome-wide TagSNP Selection across Populations via the Linkage Disequilibrium Criterion Length: 22:17 [video]
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INVITED TALK
Adam Godzik
Bioinformatics Challenges of High Throughput Biology Length: 32:08 [video]
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KEYNOTE ADDRESS
Chris Somerville
Scientific Issues Associated with the Development of Biofuels Length: 47:18 [video]
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INVITED TALK
Pavel Pevzner
De Novo Shotgun Protein Sequencing via Spectral Networks Analysis Length: 37:03 [video]
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INVITED TALK
John Dehlin The OpenCourseWare Movement and Cross-Institutional Development of Open Course Materials Length: 13:06 [video]
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Philip Bourne, Co-Director, Protein Data Bank, UCSD
Length: 19:08 [video]
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Panel Discussion
Length: 41:04 [video]
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Xiao-Li Li
Discovering Protein Complexes in Dense Reliable Neighborhoods of Protein Interaction Networks
Length: 28:07 [video]
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Seungchan Kim
Mining Molecular Contexts of Cancer via In Silico Conditioning Length: 22:24 [video]
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San Diego has the largest cluster of life-science research centers with 26 institutions located in an area less than ten square miles. Top centers include UC San Diego as well as institutes such as Salk, Neurosciences, Scripps Research and Burnham Medical, and they are complemented by one of the largest clusters of private life-science companies in the world.
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