| 8:15-8:50 AM |
Registration/Continental Breakfast
|
| SESSION I Chair: Pavel Pevzner |
| 8:50-9:00 AM |
Pavel Pevzner (University of California, San Diego)
Opening Remarks
|
| 9:00-9:50 AM |
Manolis Kellis (Massachusetts Institute of Technology)
"Interpreting the human genome" [Abstract]
|
| 9:50-10:40 AM |
Ron Shamir (Tel Aviv University)
"Some Current Computational Challenges in Biology and Medicine" [Abstract]
|
| 10:40-10:55 AM |
Coffee Break |
| SESSION II Chair: Steve Briggs |
| 10:55-11:45 AM |
David Haussler (UC Santa Cruz)
"Reconstructing 100 Million Years of Human Evolutionary History" [Abstract]
|
| 11:45-12:20 PM |
Bioinformatics Panel
Phil Bourne (UCSD) - Moderator
Serafim Batzoglou (Stanford)
David Haussler (UC Santa Cruz)
Manolis Kellis (MIT)
Ron Shamir (TAU)
Shankar Subramaniam (UCSD)
Michael Waterman (USC) |
| 12:20-12:40 PM |
Center for Algorithmic and Systems Biology (CASB) Inauguration
- Pavel Pevzner, Director, CASB
- Ramesh Rao, Director, UCSD Division, Calit2
- Frieder Seible, Dean, Jacobs School of Engineering
- Suresh Subramani, Interim Dean, Division of Biological Sciences,
UCSD
- Larry Smarr, Director, Calit2 |
| 12:40-1:40 PM |
Lunch |
| SESSION III Chair: Vineet Bafna |
| 1:40-2:30 PM |
Michael Waterman (University of Southern California)
"Optical Mapping of the Maize Genome" [Abstract]
|
| 2:30-3:00 PM |
Short Presentations:
Banu Dost "Biological Network Comparison" [Abstract]
Craig Mak "Dynamic Networks Regulating the Transcriptional
Response to DNA Damage" [Abstract] |
| 3:00-3:20 PM |
Coffee Break |
| SESSION IV Chair: Shankar Subramaniam |
| 3:20-4:10 PM |
Serafim Batzoglou (Stanford University)
"Models and Algorithms for Genomic Sequences, Proteins, and
Networks of Protein Interactions" [Abstract]
|
| 4:10-4:40 PM |
Short Presentations
- Chris Benner "HOMER: An algorithm for the de novo discovery of cis-regulatory elements from high throughput data" [Abstract]
- Christine Vogel "Insights into transcriptional and translational regulation by absolute protein expression profiling" [Abstract] |
| 4:40-7:00 PM |
Bioinformatics Poster Session
Organizers: Jocelyne Bruand and Paul Loriaux |
| 5:00-7:00 PM |
Tutorial on Algorithmic Mass Spectrometry [Abstract]
Nuno Bandeira, Stephen Tanner
University of California, San Diego
|
