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Next-Generation Sequencing Videos Now Available for On-Demand Viewing

By Alex Matthews

San Diego, Nov. 23, 2008 -- Calit2's Center for Algorithmic and Systems Biology (CASB) recently hosted the UC San Diego Next-Generation Sequencing and Informatics Symposium. The Nov. 9-10 meeting provided an introduction to next-generation sequencing techniques, along with reports on the latest data analysis algorithms and tools. The first day focused on resequencing and de novo sequencing, and the algorithmic developmens that are driving the increase in data quality and volume in this field. On day two, the focus shifted to new applications, including digital gene expression, epigenetics, targeted sequencing, protein-DNA interactions, genotyping, SNP mapping, and more. Symposium presentations are now available for on-demand viewing; click on the image or video links below to watch individual talks. [Windows Media and broadband connection required].

SUNDAY	NOVEMBER 9
SESSION 1
	Welcome Pavel Pevzner, Director, Center for Algorithmic and Systems Biolog; University of California, San Diego Length: 2:43 [video]
	Human Re-sequencing for Variant Discovery in Cancer Elaine Marids, Washington University Length: 48:00 [video]
	Informatics and Experimental Strategies for De Novo Genome Sequencing with Short Reads Elliott Margulies, National Human Genome Research Institute Length: 33:24 [video]
	Identification of genetic variants within specific regions of the human genome David Craig, Targeted Genetics Corporation (TGen) Length: 37:06 [video]
	Targeted Human Genome Resequencing Hanlee Ji, Stanford University Medical Center Length: 28:48 [video]
	Assembling Short and error-Prone DNA Reads Pavel Pevzner, University of California, San Diego Length: 39:41 [video]
	Alta-Cyclic - A self Optimizing Base Caller for the Illumina Genome Analyzer Yaniv Erlich, Cold Spring Harbor Labs Length: 28:17 [video]
	De Novo Assembly of Short Reads as a Discovery Tool Inanc Birol, BC Cancer Research Center Length: 54:41 [video]
	De Novo Genome Sequencing of the Venturia inaequalis (apple scab) Using the Illumina Genome Analyser Jasper Rees, University of the Western Cape, South Africa Length: 33:42 [video]
	SLIPPER: An Iterative Mapping Pipeline for Short DNA Sequences Terry Gaasterland, University of California, San Diego Length: 25:43 [video]
	The Tuxedo tools: ultra high-throughput mapping of short sequencing reads Cole Trapnell, University of Maryland Length: 32:36 [video]
SESSION  2	WORKSHOPS
	Illumina Length: 35:37 [video]
	CLC Bio Length: 23:31 [video]
	DNA Star Length: 42:56 [video]
	Genome Quest Length: 13:56 [video]
MONDAY	NOVEMBER 10
	Mapping the Arabidopsis Epigenome and Transcriptome by Deep Sequencing Ryan Lister, Salk Institute Length: 46:05 [video]
	The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing Katherine Sorber, DeRisi Lab UCSF Length: 32:07 [video]
	Rapid and Automated Building of a Human Genome from Aligned Short Reads Richard Carter, Illumina, Inc. Length: 25:08 [video]
	Second Generation RNA-seq Ali Mortazavi, California Institute of Technology Length: 47:11 [video]
	Analysis of the Human Transcriptome by Next-Gen Sequencing Gary Schroth, Illumina, Inc. Length: 50:45 [video]
	Targeted resequencing with long range PCR and hybrid capture W. Richard McCombie, Cold Spring Harbor Laboratory Length: 35:51 [video]
	From ChIP-chip to ChIP-Seq: unraveling the second code of the human genome Bing Ren, University of California, San Diego Video not available
	Multiplex sequencing of organelle genomes using sequencing-by-synthesis technology: Insights from the first 100 plastomes Richard Cronn, Pacific Northwest Research Station - USDA Forest Service Length: 37:41 [video]
	Unraveling gene regulation mechanisms: insights into chromatin modeling Karine Le Roch, University of California, Riverside Video not available
	Genomic association study (CHIP-Seq) of Liver X receptors beta in combination with gene expression analysis Lana Garmire, Bioengineering, UC San Diego Length: 32:14 [video]
	Empirical methods for controlling false positives and estimating confidence in ChIP-seq peaks David Nix, Huntsman Cancer Institute, Utah Length: 30:46 [video]

Related Links
Next-Generation Sequencing and Informatics Symposium