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DAY 1
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DAY 2
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Opening Remarks
Pavel Pevzner and Eleazar Eskin, Computer Science and Engineering, UCSD Jacobs School
Length: 2:30 [ video]
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Dissecting gene regulatory networks in cancer cells
Bing Ren, UCSD Cancer Center
Length: 49:24 [ video]
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PathBLAST: Finding conserved pathways via protein network alignment
Trey Ideker, Bioengineering, UCSD Jacobs School
Length: 45:43 [ video]
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Application of kernel method to reveal subtypes of TF binding motifs. Causal analysis of gene expression data.
Alexander Kel, Bioengineering, UCSD Jacobs School
Length: 13:40 [ video]
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Biological Networks Involving Metabolic Pathways and Gene Regulation: Modeling and Inference
Irit Gat-Viks, Tel Aviv University
Length: 15:58
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Pharmaceutical relevance of promoter analysis
William Hayes, Astrazeneca
Length: 26:37 [ video]
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An Assessment of Algorithms for the Discovery of Transcription Factor Binding Sites
Martin Tompa, University of Washington
Length: 39:50 [ video]
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Genomic Reconstruction of Yeast Transcription Networks
Hao Li, UC San Francisco
Length: 46:41 [ video]
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Evolutionary Signatures of Regulatory Sequences
Michael Eisen, Lawrence Berkeley National Lab
Length: 52:02 [ video]
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Genome-wide discovery of transcriptional modules from DNA sequence and gene expression
Eran Segal, Stanford University
Length: 37:33 [ video]
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The MTE, a New Core Promoter Element for Transcription by RNA Polymerase II
Jim Kadonaga, Biology, UCSD
Length: 29:09 [ video]
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Learning Regulatory Network Models that Represent Regulator States and Roles
Keith Noto, University of Wisconsin
Length: 16:16 [ video]
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The "promoters" of splicing: Intronic sequences that regulate alternative splicing
Rotem Sorek, Compugen and Tel Aviv University
Length: 36:23 [ video]
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Combinatorial control of gene expression from simple molecular interactions
Terry Hwa, Center for Theoretical Biological Physics, UCSD
Length: 47:52 [ video]
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Predicting Genetic Regulatory Response using Classification: Yeast Stress Response
Anshul Kundaje, Columbia University
Length: 20:17 [ video]
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Revealing the architecture of genetic backup circuits through inspection of transcription regulatory networks
Tzachi Pilpel, Weizmann Institute of Science (Israel)
Length: 39:23 [ video]
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Revealing selection patterns in the evolution of yeast transcription regulation
Ron Shamir, Tel Aviv University
Length: 43:56 [ video]
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Industry Roundtable
William Hayes, Astrazeneca; Rotem Sorek, Compugen and Tel Aviv University; William Krivan, ZymoGenetics; Zohar Yakhini, Agilent; Qicheng Ma, Novartis; and Jeanette Schmidt, Incyte
Length: 31:26 [ video]
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How Much is Another Mammal Worth?
Lee Newberg, Wadsworth Center
Length: 26:16 [ video]
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Variation in mRNA expression levels: the role of sequence motifs and of DNA copy number
Zohar Yakhini, Agilent
Length: 42:05 [ video]
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Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome
Thomas Manke, University of Tsukuba (Japan)
Length: 21:35 [ video]
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Using expression data to discover RNA and DNA regulatory sequence motifs
Chaya Ben-Zaken Zilberstein, Technion - Israel Institute of Technology
Length: 13:11 [ video]
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Illustration of a Computational Gene Characterization Approach Based on the Identification of Orthologous Clusters of Transcription Factor Binding Sites in Human Genomic Sequence.
William Krivan, ZymoGenetics
Length: 19:11 [ video]
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Parameter Landscape Analysis for Common Motif Discovery Programs
Natalia Poluliakh, Human Genome Center, University of Tokyo
Length: 11:15 [ video]
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PhyloGibbs: A Gibbs sampler incorporating phylogenetic information
Rahul Siddharthan, Rockefeller University
Length: 19:12 [ video]
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Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data
Nameeta Shah, UC Davis
Length: 14:52 [ video]
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